Modern Optical Microscopy. Part 1
Paper #8970 received 6 May 2023; revised manuscript received 26 Aug 2023; accepted for publication 10 Oct 2023; published online 28 Nov 2023.
DOI: 10.18287/JBPE23.09.040202
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1. V. A. Gurikov, Ernst Abbe, Nauka, Moscow (1985). [in Russian]
2. E. Abbe, “Beiträge zur theorie des mikroskops und der mikroskopischen wahrnehmung,” Archiv für mikroskopische anatomie 9(1), 413–468 (1873).
3. J. Wiedenmann, F. Oswald, and G. U. Nienhaus, “Fluorescent proteins for live cell imaging: Opportunities, limitations, and challenges,” IUBMB Life 61(11), 1029–1042 (2009).
4. S. Wäldchen, J. Lehmann, T. Klein, S. Van De Linde, and M. Sauer, “Light–induced cell damage in live–cell super-resolution microscopy,” Scientific Reports 5(1), 15348 (2015).
5. N. V. Klementieva, A. S. Mishin, E. V. Zagaynova, and K. A. Lukyanov, “The principles of super-resolution fluorescence microscopy (review),” Modern Technologies in Medicine 8(2), 130–140 (2016).
6. E. Abbé, Gesammelte abhandlungen: erster band: abhandlungenuber die theorie des mikroskops, G. Fisher, German (1906).
7. A. Titelmayer, “Better to see once, or Ultra-high resolution microscopy,” Biomolecule, 1 November 2012 (accessed on 7 June 2023). [https://biomolecula.ru/articles/luchshe-odin-raz-uvidet-ili-mikroskopiia-sverkhvysokogo-razresheniia]. [in Russian]
8. M. Minsky, “Memoir on inventing the confocal scanning microscope,” Scanning 10(4), 128–138 (1988).
9. R. H. Webb, “Confocal optical microscopy,” Reports on Progress in Physics 59(3), 427–471 (1996).
10. N. S. Claxton, T. J. Fellers, and M. W. Davidson, “Laser scanning confocal microscopy,” Encyclopedia of Medical Devices and Instrumentation 21(1), 1–37 (2006).
11. S. Wilhelm, B. Gröbler, M. Gluch, and H. Heinz, “Confocal laser scanning microscopy principles,” Zeiss, Jena, Germany.
12. A. V. Feofanov, “Spektral’naya lazernaya skaniruyushchaya konfokal’naya mikroskopiya v biologicheskikh issledovaniyakh,” Uspekhi Biologicheskoy Khimii 47, 371–410 (2007). [in Russian]
13. C. Reichhardt, M. R. Parsek, “Confocal laser scanning microscopy for analysis of Pseudomonas aeruginosa biofilm architecture and matrix localization,” Frontiers in Microbiology 10, 677 (2019).
14. J. Jonkman, C. M. Brown, G. D. Wright, K. I. Anderson, and A. J. North, “Tutorial: guidance for quantitative confocal microscopy,” Nature Protocols 15(5), 1585–611 (2020).
15. T. Luo, J. Yuan, J. Chang, Y. Dai, H. Gong, Q. Luo, and X. Yang, “Resolution and uniformity improvement of parallel confocal microscopy based on microlens arrays and a spatial light modulator,” Optics Express 31(3), 4537–4552 (2023).
16. G. I. Shteyn, Rukovodstvo po konfokal’noy mikroskopii, Izdatel’stvo Politekhnicheskogo Universiteta, Saint Peterburg (2007). ISBN: 5-7422-1674-2. [in Russian]
17. S. Dr. Hell, “Double–confocal scanning microscope,” EP0491289B1, European Patent Office, 12 December 1991.
18. S. Hell, E. H. K. Stelzer, “Properties of a 4Pi confocal fluorescence microscope,” Journal of the Optical Society of America A 9(12), 2159–2166 (1992).
19. S. Hell, E. H. K. Stelzer, “Fundamental improvement of resolution with a 4Pi–confocal fluorescence microscope using two–photon excitation,” Optics Communication 93(5–6), 277–282 (1992).
20. J. Bewersdorf, R. Schmidt, and S. W. Hell, “Comparison of I5M and 4Pi–microscopy,” Journal of Microscopy 222(2), 105–117 (2006).
21. M. G. Gustafsson, D. A. Agard, and J. W. Sedat, “I5M: 3D widefield light microscopy with better than 100 nm axial resolution,” Journal of Microscopy 195(1), 10–16 (1999).
22. V. L. Mironov, Osnovy skaniruyushchey zondovoy mikroskopii: uchebnoye posobiye dlya studentov starshikh kursov vysshikh uchebnykh zavedeniy, Rossiyskaya akademiya nauk, Institut fiziki mikrostruktur, Nizhniy Novgorod (2004). [in Russian]
23. G. Binnig, H. Rohrer, “Scanning tunneling microscopy,” Surface Science 126(1–3), 236–244 (1983).
24. D. W. Pohl, W. Denk, and M. Lanz, “Optical stethoscopy: Image recording with resolution λ/20,” Applied Physics Letters 44(7), 651–653 (1984).
25. H. Heinzelmann, B. Hecht, L. Novotny, and D.W. Pohl, “Forbidden light scanning near–field optical microscopy,” Journal of Microscopy 177(2), 115–118 (1995).
26. G. Huszka, M. A. M. Gijs, “Super-resolution optical imaging: A comparison,” Micro and Nano Engineering 2, 7–28 (2019).
27. M. C. Quong, A. Y. Elezzabi, “Offset-apertured near-field scanning optical microscope probes,” Optics Express 15(16), 10163–10174 (2007).
28. B. Hecht, H. Heinzelmann, and D. W. Pohl, “Combined aperture SNOM/PSTM: best of both worlds?” Ultramicroscopy 57(2–3), 228–234 (1995).
29. U. C. Fischer, D. W. Pohl, “Observation of single-particle plasmons by near–field optical microscopy,” Physical Review Letters 62(4), 458–461 (1989).
30. C. Girard, O. J. F. Martin, and A. Dereux, “Molecular lifetime changes induced by nanometer scale optical fields,” Physical Review Letters 75(17), 3098–3101 (1995).
31. B. Knoll, F. Keilmann, “Near-field probing of vibrational absorption for chemical microscopy,” Nature 399(6732), 134–137 (1999).
32. M. G. L. Gustafsson, “Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy,” Journal of Microscopy 198(2), 82–87 (2000).
33. M. Saxena, G. Eluru, and S. S. Gorthi, “Structured illumination microscopy,” Advances in Optics and Photonics 7(2), 241–275 (2015).
34. Y. Wu, H. Shroff, “Faster, sharper, and deeper: structured illumination microscopy for biological imaging,” Nature Methods 15, 1011–1019 (2018).
35. J. Nylk, K. Dholakia, “Light-sheet fluorescence microscopy with structured light,” Neurophotonics and Biomedical Spectroscopy, 477–501 (2019).
36. J. Huisken, J. Swoger, F. D. Bene, J. Wittbrodt, and E. H. K. Stelzer, “Optical sectioning deep inside live embryos by selective plane illumination microscopy,” Science 305(5686), 1007–1009 (2004).
37. J. Huisken, D. Y. R. Stainier, “Selective plane illumination microscopy techniques in developmental biology,” Development 136(12), 1963–1975 (2009).
38. O. Zvelto, Principles of lasers, 3rd ed., Mir, Moscow (1990) [In Russian]. ISBN: 5-03-001053-X.
39. P. J. Keller, A. D. Schmidt, J. Wittbrodt, and E. H. K. Stelzer, “Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy,” Science 322(5904), 1065–1069 (2008).
40. O. E. Olarte, J. Licea-Rodriguez, J. A. Palero, E. J. Gualda, D. Artigas, J. Mayer, J. Swoger, J. Sharpe, I. Rocha-Mendoza, R. Rangel-Rojo, and P. Loza-Alvarez, “Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles,” Biomedical Optics Express 3(7), 1492–1505 (2012).
41. Z. Shemesh, G. Chaimovich, L. Gino, N. Ozana, J. Nylk, K. Dholakia, and Z. Zalevsky, “Reducing data acquisition for light-sheet microscopy by extrapolation between imaged planes,” Journal of Biophotonics 13(7), e202000035 (2020).
42. Y. Wu, P. Wawrzusin, J. Senseney, R. S. Fischer, R. Christensen, A. Santella, A. G. York, P. W Winter, C. M Waterman, Z. Bao, D. A Colón-Ramos, M. McAuliffe, and H. Shroff “Spatially isotropic four-dimensional imaging with dual–view plane illumination microscopy,” Nature Biotechnology 31(11), 1032–1038 (2013).
43. Y. Wu, A. Ghitani, R. Christensen, A. Santella, Z. Du, G. Rondeau, Z. Bao, D. Colón-Ramos, and H. Shroff, “Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans,” Proceeding of the National Academy of Science of the USA 108(43), 17708–17713 (2011).
44. A. Kumar, Y. Wu, R. Christensen, P. Chandris, W. Gandler, E. McCreedy, A. Bokinsky, D. A Colón-Ramos, Z. Bao, M. McAuliffe, G. Rondeau, and H. Shroff, “Dual-view plane illumination microscopy for rapid and spatially isotropic imaging,” Nature Protocols 9(11), 2555–2573 (2014).
45. Y. Liu, B. Liu, J. Green, C. Duffy, M. Song, J.D. Lauderdale, and P. Kner, “Volumetric light sheet imaging with adaptive optics correction,” Biomedical Optics Express 14(4), 1757–1771 (2023).
46. J. Huisken, D. Y. R. Stainier, “Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM),” Optics Letters 32(17), 2608–2610 (2007).
47. U. Krzic, S. Gunther, T. E. Saunders, S. J. Streichan, and L. Hufnagel, “Multiview light-sheet microscope for rapid in toto imaging,” Nature Methods 9(7), 730–733 (2012).
48. R. Tomer, K. Khairy, F. Amat, and P. J. Keller, “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy,” Nature Methods 9(7), 755–763 (2012),
49. B. Schmid, G. Shah, N. Scherf, M. Weber, K. Thierbach, C. P. Campos, I. Roeder, P. Aanstad, and J. Huisken, “High–speed panoramic light-sheet microscopy reveals global endodermal cell dynamics,” Nature Communications 4(1), 2207 (2013).
50. C. Dunsby, “Optically sectioned imaging by oblique plane microscopy,” Optics Express 16(25), 20306–20316 (2008).
51. E. H. K. Stelzer, F. Strobl, B. J. Chang, F. Preusser, S. Preibisch, K. McDole, and R. Fiolka, “Light sheet fluorescence microscopy,” Nature Reviews Methods Primers 1(1), 73 (2021).
52. H. P. R. Gurram, A. S. Galande, and R. John, “Nanometric depth phase imaging using low-cost on-chip lensless inline holographic microscopy,” Optical Engineering 59(10), 104105 (2020).
53. V. G. Gendin, I. P. Gurov, “Tsifrovaya golograficheskaya mikroskopiya: sovremennyye metody registratsii gologramm mikroob’yektov,” Nauchno-Tekhnicheskiy Vestnik Informatsionnykh Tekhnologiy, Mekhaniki i Optiki 79(3), 19–27 (2012). [in Russian]
54. A. V. Belashov, A. A. Zhikhoreva, “A Method for Quantitative Characterization of Fixed Histological Samples by Means of Digital Holographic Microscopy,” Technical Physics Letters 47, 428–431 (2021).
55. C. W. Lu, A. V. Belashov, A. A. Zhikhoreva, I. V. Semenova, C. J. Cheng, L. Y. Su, and C. H. Wu, “Application of digital holographic tomography in antitumor effect of cantharides complex on 4T1 breast cancer cells,” Applied Optics 60(12), 3365–3373 (2021).
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